DePristo, Mark A.: search on Z-Library

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1

A guide to deep learning in healthcare

Esteva, Andre, Robicquet, Alexandre, Ramsundar, Bharath, Kuleshov, Volodymyr, DePristo, Mark, Chou, Katherine, Cui, Claire, Corrado, Greg, Thrun, Sebastian, Dean, Jeff

Journal:

Nature Medicine

Year:

2019

Language:

english

File:

PDF, 6.44 MB

english, 2019

2

A framework for variation discovery and genotyping using next-generation DNA sequencing data

DePristo, Mark A, Banks, Eric, Poplin, Ryan, Garimella, Kiran V, Maguire, Jared R, Hartl, Christopher, Philippakis, Anthony A, del Angel, Guillermo, Rivas, Manuel A, Hanna, Matt

Journal:

Nature Genetics

Year:

2011

Language:

english

File:

PDF, 3.59 MB

english, 2011

3

Variation in genome-wide mutation rates within and between human families

Conrad, Donald F, Keebler, Jonathan E M, DePristo, Mark A, Lindsay, Sarah J, Zhang, Yujun, Casals, Ferran, Idaghdour, Youssef, Hartl, Chris L, Torroja, Carlos, Garimella, Kiran V

Journal:

Nature Genetics

Year:

2011

Language:

english

File:

PDF, 358 KB

english, 2011

4

Deep Learning of Genomic Variation and Regulatory Network Data

Telenti, Amalio, Lippert, Christoph, Chang, Pi-Chuan, DePristo, Mark

Journal:

Human Molecular Genetics

Year:

2018

Language:

english

File:

PDF, 366 KB

english, 2018

5

The $1,000 Genome: The Revolution in DNA Sequencing and the New Era of Personalized Medicine

Mark A. DePristo

Journal:

The American Journal of Human Genetics

Year:

2010

Language:

english

File:

PDF, 29 KB

english, 2010

6

Is one solution good enough?

Furnham, Nicholas, Blundell, Tom L, DePristo, Mark A, Terwilliger, Thomas C

Journal:

Nature Structural and Molecular Biology

Year:

2006

Language:

english

File:

PDF, 83 KB

english, 2006

7

Missense meanderings in sequence space: a biophysical view of protein evolution

DePristo, Mark A., Weinreich, Daniel M., Hartl, Daniel L.

Journal:

Nature Reviews Genetics

Year:

2005

Language:

english

File:

PDF, 350 KB

english, 2005

8

The RNA degradosome: life in the fast lane of adaptive molecular evolution

Maria Jose Marcaida, Mark A. DePristo, Vidya Chandran, Agamemnon J. Carpousis, Ben F. Luisi

Journal:

Trends in Biochemical Sciences

Year:

2006

Language:

english

File:

PDF, 306 KB

english, 2006

9

Comparing strategies to fine-map the association of common SNPs at chromosome 9p21 with type 2 diabetes and myocardial infarction

Shea, Jessica, Agarwala, Vineeta, Philippakis, Anthony A, Maguire, Jared, Banks, Eric, DePristo, Mark, Thomson, Brian, Guiducci, Candace, Onofrio, Robert C, Kathiresan, Sekar, Gabriel, Stacey, Burtt,

Journal:

Nature Genetics

Year:

2011

Language:

english

File:

PDF, 582 KB

english, 2011

10

Efficiency and Power as a Function of Sequence Coverage, SNP Array Density, and Imputation

Flannick, Jason, Korn, Joshua M., Fontanillas, Pierre, Grant, George B., Banks, Eric, Depristo, Mark A., Altshuler, David, Korbel, Jan

Journal:

PLoS Computational Biology

Year:

2012

Language:

english

File:

PDF, 1.08 MB

english, 2012

11

Pacific biosciences sequencing technology for genotyping and variation discovery in human data

Carneiro, Mauricio O, Russ, Carsten, Ross, Michael G, Gabriel, Stacey B, Nusbaum, Chad, DePristo, Mark A

Journal:

Year:

2012

Language:

english

File:

PDF, 318 KB

english, 2012

12

Analysis of Rare, Exonic Variation amongst Subjects with Autism Spectrum Disorders and Population Controls

Liu, Li, Sabo, Aniko, Neale, Benjamin M., Nagaswamy, Uma, Stevens, Christine, Lim, Elaine, Bodea, Corneliu A., Muzny, Donna, Reid, Jeffrey G., Banks, Eric, Coon, Hillary, DePristo, Mark, Dinh, Huyen,

Journal:

Year:

2013

Language:

english

File:

PDF, 713 KB

english, 2013

13

The Genome Analysis Toolkit : A MapReduce framework for analyzing next-generation DNA sequencing data

Mckenna, Aaron, Hanna, Matthew, Banks, Eric, Sivachenko, Andrey, Cibulskis, Kristian, Kernytsky, Andrew, Garimella, Kiran, Altshuler, David, Gabriel, Stacey, Daly, Mark, Depristo, Mark A

Year:

2010

Language:

english

File:

PDF, 574 KB

english, 2010

14

Knowledge-Based Real-Space Explorations for Low-Resolution Structure Determination

Nicholas Furnham, Andrew S. Doré, Dimitri Y. Chirgadze, Paul I.W. de Bakker, Mark A. DePristo, Tom L. Blundell

Journal:

Year:

2006

Language:

english

File:

PDF, 395 KB

english, 2006

15

On the abundance, amino acid composition, and evolutionary dynamics of low-complexity regions in proteins

Mark A. DePristo, Martine M. Zilversmit, Daniel L. Hartl

Journal:

Year:

2006

Language:

english

File:

PDF, 599 KB

english, 2006

16

Corrected effective-medium study of metal-surface relaxation

Sinnott, Susan B., Stave, Mark S., Raeker, Todd J., DePristo, Andrew E.

Journal:

Physical Review B

Year:

1991

Language:

english

File:

PDF, 624 KB

english, 1991

17

Next-generation sequencing for HLA typing of class I loci

Rachel L Erlich, Xiaoming Jia, Scott Anderson, Eric Banks, Xiaojiang Gao, Mary Carrington, Namrata Gupta, Mark A DePristo, Matthew R Henn, Niall J Lennon, Paul IW de Bakker

Journal:

Year:

2011

Language:

english

File:

PDF, 6.08 MB

english, 2011

18

Discrete restraint-based protein modeling and the Cα-trace problem

Mark A. DePristo, Paul I.W. de Bakker, Reshma P. Shetty, Tom L. Blundell

Journal:

Protein Science

Year:

2003

Language:

english

File:

PDF, 257 KB

english, 2003

19

Crystallographic Refinement by Knowledge-Based Exploration of Complex Energy Landscapes

Mark A. DePristo, Paul I.W. de Bakker, Russell J.K. Johnson, Tom L. Blundell

Journal:

Year:

2005

Language:

english

File:

PDF, 505 KB

english, 2005

20

Sublethal Antibiotic Treatment Leads to Multidrug Resistance via Radical-Induced Mutagenesis

Michael A. Kohanski, Mark A. DePristo, James J. Collins

Journal:

Year:

2010

Language:

english

File:

PDF, 351 KB

english, 2010

21

Heterogeneity and Inaccuracy in Protein Structures Solved by X-Ray Crystallography

Mark A DePristo, Paul I.W de Bakker, Tom L Blundell

Journal:

Year:

2004

Language:

english

File:

PDF, 280 KB

english, 2004

22

Corrected effective medium method. 3. Application to clusters of magnesium and copper

Kress, Joel D., Stave, Mark S., DePristo, Andrew E.

Journal:

Journal of Physical Chemistry

Year:

1989

Language:

english

File:

PDF, 1.33 MB

english, 1989

23

Dissociation dynamics of D2 on Ni13 clusters: Structural dependence

K. Raghavan, Mark S. Stave, Andrew E. Depristo

Journal:

Chemical Physics Letters

Year:

1988

Language:

english

File:

PDF, 562 KB

english, 1988

24

Ab initio construction of polypeptide fragments: Efficient generation of accurate, representative ensembles

Mark A. DePristo, Paul I. W. de Bakker, Simon C. Lovell, Tom L. Blundell

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2003

Language:

english

File:

PDF, 406 KB

english, 2003

25

Ab initio construction of polypeptide fragments: Accuracy of loop decoy discrimination by an all-atom statistical potential and the AMBER force field with the Generalized Born solvation model

Paul I. W. de Bakker, Mark A. DePristo, David F. Burke, Tom L. Blundell

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2003

Language:

english

File:

PDF, 2.09 MB

english, 2003

26

SCT89: a computer code for atomic and molecular scattering from clean and adsorbate covered surfaces

David E. Sanders, Mark S. Stave, Leslie S. Perkins, Andrew E. DePristo

Journal:

Computer Physics Communications

Year:

1992

Language:

english

File:

PDF, 2.66 MB

english, 1992

27

Simultaneous determination of protein structure and dynamics

Lindorff-Larsen, Kresten, Best, Robert B., DePristo, Mark A., Dobson, Christopher M., Vendruscolo, Michele

Journal:

Year:

2005

Language:

english

File:

PDF, 294 KB

english, 2005

28

A framework for the detection of de novo mutations in family-based sequencing data

Francioli, Laurent C, Cretu-Stancu, Mircea, Garimella, Kiran V, Fromer, Menachem, Kloosterman, Wigard P, Samocha, Kaitlin E, Neale, Benjamin M, Daly, Mark J, Banks, Eric, DePristo, Mark A, de Bakker,

Journal:

European Journal of Human Genetics

Year:

2016

Language:

english

File:

PDF, 815 KB

english, 2016

29

Introducing simulated cellular architecture to the quantitative analysis of fluorescent microscopy

Mark A. DePristo, Lynne Chang, Ronald D. Vale, Shahid M. Khan, Karen Lipkow

Journal:

Progress in Biophysics and Molecular Biology

Year:

2009

Language:

english

File:

PDF, 1.06 MB

english, 2009

30

Conformer generation under restraints

Paul IW de Bakker, Nicholas Furnham, Tom L Blundell, Mark A DePristo

Journal:

Current Opinion in Structural Biology

Year:

2006

Language:

english

File:

PDF, 1.64 MB

english, 2006

31

The structure of NiN and PdN clusters: 4≤N≤23

Stave, Mark S., DePristo, Andrew E.

Journal:

The Journal of Chemical Physics

Year:

1992

Language:

english

File:

PDF, 1.39 MB

english, 1992

32

Dissociation dynamics of D2 on rigid and nonrigid Ni clusters

Fournier, René, Stave, Mark S., DePristo, Andrew E.

Journal:

The Journal of Chemical Physics

Year:

1992

Language:

english

File:

PDF, 1022 KB

english, 1992

33

Corrected effective medium method. V. Simplifications for molecular dynamics and Monte Carlo simulations

Stave, Mark S., Sanders, David E., Raeker, Todd J., DePristo, Andrew E.

Journal:

The Journal of Chemical Physics

Year:

1990

Language:

english

File:

PDF, 1.25 MB

english, 1990

34

Ni clusters: Structures and reactivity with D2

Raghavan, K., Stave, Mark S., DePristo, Andrew E.

Journal:

The Journal of Chemical Physics

Year:

1989

Language:

english

File:

PDF, 954 KB

english, 1989

35

The subtle benefits of being promiscuous: Adaptive evolution potentiated by enzyme promiscuity

DePristo, Mark A.

Journal:

Year:

2007

Language:

english

File:

PDF, 188 KB

english, 2007

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